PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G185800.1
Common NameB456_004G185800, LOC105791936
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 216aa    MW: 23662.4 Da    PI: 5.9013
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G185800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.00016587123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y+C+ C + F++   L  H+++H
  Gorai.004G185800.1 65 YTCTFCRREFRSAQALGGHMNVH 87
                        9********************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.19E-66292No hitNo description
Gene3DG3DSA:3.30.160.608.9E-46390IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.6E-56588IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.1576592IPR007087Zinc finger, C2H2
SMARTSM003550.00666587IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806787IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MAADLRLLSL TQLQKLAQSQ HNQNLMAASW VWNPQEAADD DSWEVRAFAQ DTGNVMGTTW  60
PPRSYTCTFC RREFRSAQAL GGHMNVHRRD RARLHQTHPP APTVPLINQT SSSTTQDFVS  120
DGGLCLLYQI PTPNGAFNSP SMNPCSLDST SPLLSMSPYP SNNLMAPPPP PYINYPATPP  180
GLHNSSSADN NICSMETSIE ELDLELRLGQ RPTPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A1e-136087229superman protein
2l1o_A1e-136087229Transcriptional regulator SUPERMAN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6159541e-170JX615954.1 Gossypium hirsutum clone NBRI_GE60252 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012475704.11e-159PREDICTED: transcriptional regulator SUPERMAN-like
TrEMBLA0A0D2R7761e-158A0A0D2R776_G
STRINGPOPTR_0003s09000.15e-75(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52842647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.11e-42C2H2 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]